// This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2008 Gael Guennebaud <g.gael@free.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 3 of the License, or (at your option) any later version.
//
// Alternatively, you can redistribute it and/or
// modify it under the terms of the GNU General Public License as
// published by the Free Software Foundation; either version 2 of
// the License, or (at your option) any later version.
//
// Eigen is distributed in the hope that it will be useful, but WITHOUT ANY
// WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License or the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License and a copy of the GNU General Public License along with
// Eigen. If not, see <http://www.gnu.org/licenses/>.

#ifndef EIGEN_SVD_H
#define EIGEN_SVD_H

/** \ingroup SVD_Module
  *
  * \class SVD
  *
  * \brief Standard SVD decomposition of a matrix and associated features
  *
  * \param MatrixType the type of the matrix of which we are computing the SVD decomposition
  *
  * This class performs a standard SVD decomposition of a real matrix A of size \c M x \c N
  * with \c M \>= \c N.
  *
  *
  * \sa MatrixBase::SVD()
  */
template<typename MatrixType> class SVD
{
  private:
    typedef typename MatrixType::Scalar Scalar;
    typedef typename NumTraits<typename MatrixType::Scalar>::Real RealScalar;

    enum {
      PacketSize = ei_packet_traits<Scalar>::size,
      AlignmentMask = int(PacketSize)-1,
      MinSize = EIGEN_ENUM_MIN(MatrixType::RowsAtCompileTime, MatrixType::ColsAtCompileTime)
    };
    
    typedef Matrix<Scalar, MatrixType::RowsAtCompileTime, 1> ColVector;
    typedef Matrix<Scalar, MatrixType::ColsAtCompileTime, 1> RowVector;
    
    typedef Matrix<Scalar, MatrixType::RowsAtCompileTime, MinSize> MatrixUType;
    typedef Matrix<Scalar, MatrixType::ColsAtCompileTime, MatrixType::ColsAtCompileTime> MatrixVType;
    typedef Matrix<Scalar, MinSize, 1> SingularValuesType;

  public:
  
    SVD(const MatrixType& matrix)
      : m_matU(matrix.rows(), std::min(matrix.rows(), matrix.cols())),
        m_matV(matrix.cols(),matrix.cols()),
        m_sigma(std::min(matrix.rows(),matrix.cols()))
    {
      compute(matrix);
    }

    template<typename OtherDerived, typename ResultType>
    void solve(const MatrixBase<OtherDerived> &b, ResultType* result) const;

    const MatrixUType& matrixU() const { return m_matU; }
    const SingularValuesType& singularValues() const { return m_sigma; }
    const MatrixVType& matrixV() const { return m_matV; }

    void compute(const MatrixType& matrix);
    SVD& sort();

  protected:
    /** \internal */
    MatrixUType m_matU;
    /** \internal */
    MatrixVType m_matV;
    /** \internal */
    SingularValuesType m_sigma;
};

/** Computes / recomputes the SVD decomposition A = U S V^* of \a matrix
  *
  * \note this code has been adapted from JAMA (public domain)
  */
template<typename MatrixType>
void SVD<MatrixType>::compute(const MatrixType& matrix)
{
  const int m = matrix.rows();
  const int n = matrix.cols();
  const int nu = std::min(m,n);
  
  m_matU.resize(m, nu);
  m_matU.setZero();
  m_sigma.resize(std::min(m,n));
  m_matV.resize(n,n);

  RowVector e(n);
  ColVector work(m);
  MatrixType matA(matrix);
  const bool wantu = true;
  const bool wantv = true;
  int i=0, j=0, k=0;

  // Reduce A to bidiagonal form, storing the diagonal elements
  // in s and the super-diagonal elements in e.
  int nct = std::min(m-1,n);
  int nrt = std::max(0,std::min(n-2,m));
  for (k = 0; k < std::max(nct,nrt); k++)
  {
    if (k < nct)
    {
      // Compute the transformation for the k-th column and
      // place the k-th diagonal in m_sigma[k].
      m_sigma[k] = matA.col(k).end(m-k).norm();
      if (m_sigma[k] != 0.0) // FIXME
      {
        if (matA(k,k) < 0.0)
          m_sigma[k] = -m_sigma[k];
        matA.col(k).end(m-k) /= m_sigma[k];
        matA(k,k) += 1.0;
      }
      m_sigma[k] = -m_sigma[k];
    }
    
    for (j = k+1; j < n; j++)
    {
      if ((k < nct) && (m_sigma[k] != 0.0))
      {
        // Apply the transformation.
        Scalar t = matA.col(k).end(m-k).dot(matA.col(j).end(m-k)); // FIXME dot product or cwise prod + .sum() ??
        t = -t/matA(k,k);
        matA.col(j).end(m-k) += t * matA.col(k).end(m-k);
      }

      // Place the k-th row of A into e for the
      // subsequent calculation of the row transformation.
      e[j] = matA(k,j);
    }

    // Place the transformation in U for subsequent back multiplication.
    if (wantu & (k < nct))
      m_matU.col(k).end(m-k) = matA.col(k).end(m-k);

    if (k < nrt)
    {
      // Compute the k-th row transformation and place the
      // k-th super-diagonal in e[k].
      e[k] = e.end(n-k-1).norm();
      if (e[k] != 0.0)
      {
          if (e[k+1] < 0.0)
            e[k] = -e[k];
          e.end(n-k-1) /= e[k];
          e[k+1] += 1.0;
      }
      e[k] = -e[k];
      if ((k+1 < m) & (e[k] != 0.0))
      {
        // Apply the transformation.
        work.end(m-k-1) = matA.corner(BottomRight,m-k-1,n-k-1) * e.end(n-k-1);
        for (j = k+1; j < n; j++)
          matA.col(j).end(m-k-1) += (-e[j]/e[k+1]) * work.end(m-k-1);
      }

      // Place the transformation in V for subsequent back multiplication.
      if (wantv)
        m_matV.col(k).end(n-k-1) = e.end(n-k-1);
    }
  }


  // Set up the final bidiagonal matrix or order p.
  int p = std::min(n,m+1);
  if (nct < n)
    m_sigma[nct] = matA(nct,nct);
  if (m < p)
    m_sigma[p-1] = 0.0;
  if (nrt+1 < p)
    e[nrt] = matA(nrt,p-1);
  e[p-1] = 0.0;

  // If required, generate U.
  if (wantu)
  {
    for (j = nct; j < nu; j++)
    {
      m_matU.col(j).setZero();
      m_matU(j,j) = 1.0;
    }
    for (k = nct-1; k >= 0; k--)
    {
      if (m_sigma[k] != 0.0)
      {
        for (j = k+1; j < nu; j++)
        {
          Scalar t = m_matU.col(k).end(m-k).dot(m_matU.col(j).end(m-k)); // FIXME is it really a dot product we want ?
          t = -t/m_matU(k,k);
          m_matU.col(j).end(m-k) += t * m_matU.col(k).end(m-k);
        }
        m_matU.col(k).end(m-k) = - m_matU.col(k).end(m-k);
        m_matU(k,k) = 1.0 + m_matU(k,k);
        if (k-1>0)
          m_matU.col(k).start(k-1).setZero();
      }
      else
      {
        m_matU.col(k).setZero();
        m_matU(k,k) = 1.0;
      }
    }
  }

  // If required, generate V.
  if (wantv)
  {
    for (k = n-1; k >= 0; k--)
    {
      if ((k < nrt) & (e[k] != 0.0))
      {
        for (j = k+1; j < nu; j++)
        {
          Scalar t = m_matV.col(k).end(n-k-1).dot(m_matV.col(j).end(n-k-1)); // FIXME is it really a dot product we want ?
          t = -t/m_matV(k+1,k);
          m_matV.col(j).end(n-k-1) += t * m_matV.col(k).end(n-k-1);
        }
      }
      m_matV.col(k).setZero();
      m_matV(k,k) = 1.0;
    }
  }

  // Main iteration loop for the singular values.
  int pp = p-1;
  int iter = 0;
  Scalar eps(pow(2.0,-52.0));
  while (p > 0)
  {
    int k=0;
    int kase=0;

    // Here is where a test for too many iterations would go.

    // This section of the program inspects for
    // negligible elements in the s and e arrays.  On
    // completion the variables kase and k are set as follows.

    // kase = 1     if s(p) and e[k-1] are negligible and k<p
    // kase = 2     if s(k) is negligible and k<p
    // kase = 3     if e[k-1] is negligible, k<p, and
    //              s(k), ..., s(p) are not negligible (qr step).
    // kase = 4     if e(p-1) is negligible (convergence).

    for (k = p-2; k >= -1; k--)
    {
      if (k == -1)
          break;
      if (ei_abs(e[k]) <= eps*(ei_abs(m_sigma[k]) + ei_abs(m_sigma[k+1])))
      {
          e[k] = 0.0;
          break;
      }
    }
    if (k == p-2)
    {
      kase = 4;
    }
    else
    {
      int ks;
      for (ks = p-1; ks >= k; ks--)
      {
        if (ks == k)
          break;
        Scalar t( (ks != p ? ei_abs(e[ks]) : 0.) + (ks != k+1 ? ei_abs(e[ks-1]) : 0.));
        if (ei_abs(m_sigma[ks]) <= eps*t)
        {
          m_sigma[ks] = 0.0;
          break;
        }
      }
      if (ks == k)
      {
        kase = 3;
      }
      else if (ks == p-1)
      {
        kase = 1;
      }
      else
      {
        kase = 2;
        k = ks;
      }
    }
    k++;

    // Perform the task indicated by kase.
    switch (kase)
    {

      // Deflate negligible s(p).
      case 1:
      {
        Scalar f(e[p-2]);
        e[p-2] = 0.0;
        for (j = p-2; j >= k; j--)
        {
          Scalar t(hypot(m_sigma[j],f));
          Scalar cs(m_sigma[j]/t);
          Scalar sn(f/t);
          m_sigma[j] = t;
          if (j != k)
          {
            f = -sn*e[j-1];
            e[j-1] = cs*e[j-1];
          }
          if (wantv)
          {
            for (i = 0; i < n; i++)
            {
              t = cs*m_matV(i,j) + sn*m_matV(i,p-1);
              m_matV(i,p-1) = -sn*m_matV(i,j) + cs*m_matV(i,p-1);
              m_matV(i,j) = t;
            }
          }
        }
      }
      break;

      // Split at negligible s(k).
      case 2:
      {
        Scalar f(e[k-1]);
        e[k-1] = 0.0;
        for (j = k; j < p; j++)
        {
          Scalar t(hypot(m_sigma[j],f));
          Scalar cs( m_sigma[j]/t);
          Scalar sn(f/t);
          m_sigma[j] = t;
          f = -sn*e[j];
          e[j] = cs*e[j];
          if (wantu)
          {
            for (i = 0; i < m; i++)
            {
              t = cs*m_matU(i,j) + sn*m_matU(i,k-1);
              m_matU(i,k-1) = -sn*m_matU(i,j) + cs*m_matU(i,k-1);
              m_matU(i,j) = t;
            }
          }
        }
      }
      break;

      // Perform one qr step.
      case 3:
      {
        // Calculate the shift.
        Scalar scale = std::max(std::max(std::max(std::max(
                        ei_abs(m_sigma[p-1]),ei_abs(m_sigma[p-2])),ei_abs(e[p-2])),
                        ei_abs(m_sigma[k])),ei_abs(e[k]));
        Scalar sp = m_sigma[p-1]/scale;
        Scalar spm1 = m_sigma[p-2]/scale;
        Scalar epm1 = e[p-2]/scale;
        Scalar sk = m_sigma[k]/scale;
        Scalar ek = e[k]/scale;
        Scalar b = ((spm1 + sp)*(spm1 - sp) + epm1*epm1)/2.0;
        Scalar c = (sp*epm1)*(sp*epm1);
        Scalar shift = 0.0;
        if ((b != 0.0) || (c != 0.0))
        {
          shift = ei_sqrt(b*b + c);
          if (b < 0.0)
            shift = -shift;
          shift = c/(b + shift);
        }
        Scalar f = (sk + sp)*(sk - sp) + shift;
        Scalar g = sk*ek;

        // Chase zeros.

        for (j = k; j < p-1; j++)
        {
          Scalar t = hypot(f,g);
          Scalar cs = f/t;
          Scalar sn = g/t;
          if (j != k)
            e[j-1] = t;
          f = cs*m_sigma[j] + sn*e[j];
          e[j] = cs*e[j] - sn*m_sigma[j];
          g = sn*m_sigma[j+1];
          m_sigma[j+1] = cs*m_sigma[j+1];
          if (wantv)
          {
            for (i = 0; i < n; i++)
            {
              t = cs*m_matV(i,j) + sn*m_matV(i,j+1);
              m_matV(i,j+1) = -sn*m_matV(i,j) + cs*m_matV(i,j+1);
              m_matV(i,j) = t;
            }
          }
          t = hypot(f,g);
          cs = f/t;
          sn = g/t;
          m_sigma[j] = t;
          f = cs*e[j] + sn*m_sigma[j+1];
          m_sigma[j+1] = -sn*e[j] + cs*m_sigma[j+1];
          g = sn*e[j+1];
          e[j+1] = cs*e[j+1];
          if (wantu && (j < m-1))
          {
            for (i = 0; i < m; i++)
            {
              t = cs*m_matU(i,j) + sn*m_matU(i,j+1);
              m_matU(i,j+1) = -sn*m_matU(i,j) + cs*m_matU(i,j+1);
              m_matU(i,j) = t;
            }
          }
        }
        e[p-2] = f;
        iter = iter + 1;
      }
      break;

      // Convergence.
      case 4:
      {
        // Make the singular values positive.
        if (m_sigma[k] <= 0.0)
        {
          m_sigma[k] = (m_sigma[k] < 0.0 ? -m_sigma[k] : 0.0);
          if (wantv)
            m_matV.col(k).start(pp+1) = -m_matV.col(k).start(pp+1);
        }

        // Order the singular values.
        while (k < pp)
        {
          if (m_sigma[k] >= m_sigma[k+1])
            break;
          Scalar t = m_sigma[k];
          m_sigma[k] = m_sigma[k+1];
          m_sigma[k+1] = t;
          if (wantv && (k < n-1))
            m_matV.col(k).swap(m_matV.col(k+1));
          if (wantu && (k < m-1))
            m_matU.col(k).swap(m_matU.col(k+1));
          k++;
        }
        iter = 0;
        p--;
      }
      break;
    } // end big switch
  } // end iterations
}

template<typename MatrixType>
SVD<MatrixType>& SVD<MatrixType>::sort()
{
  int mu = m_matU.rows(); 
  int mv = m_matV.rows(); 
  int n  = m_matU.cols();

  for (int i=0; i<n; i++)
  {
    int  k = i; 
    Scalar p = m_sigma.coeff(i);

    for (int j=i+1; j<n; j++)
    {
      if (m_sigma.coeff(j) > p) 
      {
        k = j;
        p = m_sigma.coeff(j);
      }
    }
    if (k != i)
    {
      m_sigma.coeffRef(k) = m_sigma.coeff(i);  // i.e.
      m_sigma.coeffRef(i) = p;                 // swaps the i-th and the k-th elements

      int j = mu;
      for(int s=0; j!=0; ++s, --j)
        std::swap(m_matU.coeffRef(s,i), m_matU.coeffRef(s,k));

      j = mv;
      for (int s=0; j!=0; ++s, --j)
        std::swap(m_matV.coeffRef(s,i), m_matV.coeffRef(s,k));
    }
  }
  return *this;
}

/** \returns the solution of \f$ A x = b \f$ using the current SVD decomposition of A.
  * The parts of the solution corresponding to zero singular values are ignored.
  *
  * \sa MatrixBase::svd(), LU::solve(), Cholesky::solve()
  */
template<typename MatrixType>
template<typename OtherDerived, typename ResultType>
void SVD<MatrixType>::solve(const MatrixBase<OtherDerived> &b, ResultType* result) const
{
  const int rows = m_matU.rows();
  ei_assert(b.rows() == rows);

  Scalar maxVal = m_sigma.cwise().abs().maxCoeff();
  for (int j=0; j<b.cols(); ++j)
  {
    Matrix<Scalar,MatrixUType::RowsAtCompileTime,1> aux = m_matU.transpose() * b.col(j);

    for (int i = 0; i <m_matU.cols(); i++)
    {
      Scalar si = m_sigma.coeff(i);
      if (ei_isMuchSmallerThan(ei_abs(si),maxVal))
        aux.coeffRef(i) = 0;
      else
        aux.coeffRef(i) /= si;
    }

    result->col(j) = m_matV * aux;
  }
}

/** \svd_module
  * \returns the SVD decomposition of \c *this
  */
template<typename Derived>
inline SVD<typename MatrixBase<Derived>::EvalType>
MatrixBase<Derived>::svd() const
{
  return SVD<typename ei_eval<Derived>::type>(derived());
}

#endif // EIGEN_SVD_H